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nckap5l NCK-associated protein 5-like [ Danio rerio (zebrafish) ]

Gene ID: 568475, updated on 2-Nov-2024

Summary

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Official Symbol
nckap5lprovided by ZNC
Official Full Name
NCK-associated protein 5-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-304
See related
Ensembl:ENSDARG00000079148 AllianceGenome:ZFIN:ZDB-GENE-090313-304
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb77e12; wu:fb77e12; si:dkey-31b16.13
Summary
Predicted to be involved in microtubule bundle formation and microtubule depolymerization. Predicted to be active in microtubule plus-end. Orthologous to human NCKAP5L (NCK associated protein 5 like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See nckap5l in Genome Data Viewer
Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (24611705..24664358)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (24685145..24739318)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene mutL homolog 3 (E. coli) Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene microRNA 26b Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 Neighboring gene stromal cell derived factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
nck-associated protein 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    24611705..24664358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162212.5 → XP_005162269.1  nck-associated protein 5-like isoform X1

    See identical proteins and their annotated locations for XP_005162269.1

    UniProtKB/TrEMBL
    A0A8M2B982
    Conserved Domains (2) summary
    pfam15246
    Location:1023 → 1316
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:520 → 771
    DUF4045; Domain of unknown function (DUF4045)

  2. XM_021469964.2 → XP_021325639.1  nck-associated protein 5-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9PQS7
    Related
    ENSDARP00000116785.1, ENSDART00000134978.2
    Conserved Domains (2) summary
    pfam15246
    Location:1022 → 1315
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:519 → 770
    DUF4045; Domain of unknown function (DUF4045)

  3. XM_005162213.5 → XP_005162270.1  nck-associated protein 5-like isoform X1

    See identical proteins and their annotated locations for XP_005162270.1

    UniProtKB/TrEMBL
    A0A8M2B982
    Conserved Domains (2) summary
    pfam15246
    Location:1023 → 1316
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:520 → 771
    DUF4045; Domain of unknown function (DUF4045)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395151.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    232302..284955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473691.2 → XP_021329366.1  nck-associated protein 5-like isoform X1

    UniProtKB/TrEMBL
    A0A8M2B982
    Conserved Domains (2) summary
    pfam15246
    Location:1023 → 1316
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:520 → 771
    DUF4045; Domain of unknown function (DUF4045)

  2. XM_021473693.2 → XP_021329368.1  nck-associated protein 5-like isoform X2

    UniProtKB/TrEMBL
    A0A8M9PQS7
    Conserved Domains (2) summary
    pfam15246
    Location:1022 → 1315
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:519 → 770
    DUF4045; Domain of unknown function (DUF4045)

  3. XM_021473692.2 → XP_021329367.1  nck-associated protein 5-like isoform X1

    UniProtKB/TrEMBL
    A0A8M2B982
    Conserved Domains (2) summary
    pfam15246
    Location:1023 → 1316
    NCKAP5; Nck-associated protein 5, Peripheral clock protein
    cl25751
    Location:520 → 771
    DUF4045; Domain of unknown function (DUF4045)
Nucleotide Protein Strain
Heading Accession and Version

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