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cog5 component of oligomeric golgi complex 5 [ Danio rerio (zebrafish) ]

Gene ID: 567886, updated on 2-Nov-2024

Summary

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Official Symbol
cog5provided by ZNC
Official Full Name
component of oligomeric golgi complex 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-47
See related
Ensembl:ENSDARG00000008235 AllianceGenome:ZFIN:ZDB-GENE-041210-47
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-217k21.3
Summary
Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See cog5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (2548783..2637704, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (2618672..2707617, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cysteine and glycine-rich protein 2 Neighboring gene E2F transcription factor 7 Neighboring gene G protein-coupled receptor 22a Neighboring gene dihydrouridine synthase 4-like (S. cerevisiae) Neighboring gene B cell receptor associated protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC162012

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
part_of Golgi transport complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045144.1 → NP_001038609.1  conserved oligomeric Golgi complex subunit 5

    Status: PROVISIONAL

    Source sequence(s)
    BX072538
    UniProtKB/TrEMBL
    A0A2R8RQB0, A0A8M1NA26
    Related
    ENSDARP00000150497.1, ENSDART00000192550.1
    Conserved Domains (1) summary
    pfam10392
    Location:19 → 142
    COG5; Golgi transport complex subunit 5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    2548783..2637704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164473.4 → XP_005164530.1  conserved oligomeric Golgi complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBN4, F6NMG5
    Related
    ENSDARP00000019903.9, ENSDART00000021953.11
    Conserved Domains (1) summary
    pfam10392
    Location:19 → 142
    COG5; Golgi transport complex subunit 5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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