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fbxo11b F-box protein 11b [ Danio rerio (zebrafish) ]

Gene ID: 567742, updated on 17-Sep-2024

Summary

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Official Symbol
fbxo11bprovided by ZNC
Official Full Name
F-box protein 11bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110810-2
See related
Ensembl:ENSDARG00000061631 AllianceGenome:ZFIN:ZDB-GENE-110810-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fbxo11-like
Summary
Orthologous to human FBXO11 (F-box protein 11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See fbxo11b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (24841719..24904944, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (24720500..24784034, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene golgin subfamily A member 6-like protein 1 Neighboring gene forkhead box N2b Neighboring gene mutS homolog 2 (E. coli) Neighboring gene calmodulin 2b, (phosphorylase kinase, delta)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular characterisation and inductive expression of a fish protein arginine methyltransferase 1 gene in response to virus infection. Dong CW, et al. Fish Shellfish Immunol, 2007 Apr. PMID 17055744
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
F-box only protein 11
Names
F-box only protein 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    24841719..24904944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_691042.10 → XP_696134.3  F-box only protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PME1, U3JA39
    Related
    ENSDARP00000127104.1, ENSDART00000153436.2
    Conserved Domains (3) summary
    pfam12937
    Location:109 → 152
    F-box-like
    pfam13229
    Location:616 → 775
    Beta_helix; Right handed beta helix region
    cl19744
    Location:802 → 843
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

  2. XM_005156232.5 → XP_005156289.1  F-box only protein 11 isoform X2

    See identical proteins and their annotated locations for XP_005156289.1

    UniProtKB/TrEMBL
    A0A8M9QEP9
    Conserved Domains (3) summary
    pfam12937
    Location:73 → 116
    F-box-like
    pfam13229
    Location:580 → 739
    Beta_helix; Right handed beta helix region
    cl19744
    Location:766 → 807
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394844.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    180180..242211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472548.2 → XP_021328223.1  F-box only protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PME1, U3JA39
    Conserved Domains (3) summary
    pfam12937
    Location:109 → 152
    F-box-like
    pfam13229
    Location:616 → 775
    Beta_helix; Right handed beta helix region
    cl19744
    Location:802 → 843
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

  2. XM_021472549.2 → XP_021328224.1  F-box only protein 11 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QEP9
    Conserved Domains (3) summary
    pfam12937
    Location:73 → 116
    F-box-like
    pfam13229
    Location:580 → 739
    Beta_helix; Right handed beta helix region
    cl19744
    Location:766 → 807
    zf-UBR; Putative zinc finger in N-recognin (UBR box)
Nucleotide Protein
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