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si:dkey-25o16.4 si:dkey-25o16.4 [ Danio rerio (zebrafish) ]

Gene ID: 567619, updated on 2-Nov-2024

Summary

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Official Symbol
si:dkey-25o16.4provided by ZNC
Official Full Name
si:dkey-25o16.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-969
See related
Ensembl:ENSDARG00000096554 AllianceGenome:ZFIN:ZDB-GENE-030131-969
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb54e10; wu:fb54e10
Summary
Predicted to act upstream of or within cell division and regulation of attachment of spindle microtubules to kinetochore. Orthologous to human SPAG5 (sperm associated antigen 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:dkey-25o16.4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (26676776..26700444)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (25983037..26006724)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene hemogen Neighboring gene tRNA methyltransferase O Neighboring gene forkhead box E1 Neighboring gene SH3 domain containing GRB2 like 2a, endophilin A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of attachment of spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sperm-associated antigen 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    26676776..26700444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690920.8 → XP_696012.4  sperm-associated antigen 5

    UniProtKB/TrEMBL
    A0A8N7TBK5, R4GEI9
    Related
    ENSDARP00000126902.1, ENSDART00000152299.2
    Conserved Domains (3) summary
    pfam12718
    Location:1078 → 1216
    Tropomyosin_1; Tropomyosin like
    pfam14662
    Location:942 → 1138
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
    cl19219
    Location:1393 → 1477
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

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