sid4 secreted immunoglobulin domain 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sid4provided by ZNC
Official Full Name: secreted immunoglobulin domain 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-050726-3
See related: AllianceGenome:ZFIN:ZDB-GENE-050726-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Enables identical protein binding activity. Acts upstream of or within anatomical structure morphogenesis. Is expressed in several structures, including blastoderm; brain; hematopoietic system; liver; and yolk syncytial layer. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: not in current annotation release
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Genomic context

Location:: chromosome: 1

Annotation release	Status	Assembly	Chr	Location
105	latest, but not current	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (57971071..57980853, complement)

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Secreted immunoglobulin domain 4 (sid4), may function as a co-factor in extracellular matrix interactions, in processes underlying tissue patterning and organogenesis.
Title: Sid4: A secreted vertebrate immunoglobulin protein with roles in zebrafish embryogenesis.

Submit: New GeneRIF Correction

General gene information

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Markers

fb92g12.y1 (e-PCR)
- UniSTS:191768

G45500 (e-PCR)
- UniSTS:106302

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables extracellular matrix binding	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables identical protein binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within anatomical structure morphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: secreted immunoglobulin domain 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001034182.2 → NP_001029354.2 secreted immunoglobulin domain 4 precursor

See identical proteins and their annotated locations for NP_001029354.2

Status: PROVISIONAL

Source sequence(s)

BC134848

UniProtKB/TrEMBL

A0A0B4J1A7

Conserved Domains (5) summary

cd00096
Location:312 → 374

Ig; Immunoglobulin domain

smart00408
Location:221 → 281

IGc2; Immunoglobulin C-2 Type

smart00410
Location:217 → 291

IG_like; Immunoglobulin like

pfam07679
Location:23 → 110

I-set; Immunoglobulin I-set domain

cl11960
Location:23 → 111

Ig; Immunoglobulin domain