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rrbp1b ribosome binding protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 567029, updated on 2-Nov-2024

Summary

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Official Symbol
rrbp1bprovided by ZNC
Official Full Name
ribosome binding protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030429-36
See related
Ensembl:ENSDARG00000041703 AllianceGenome:ZFIN:ZDB-GENE-030429-36
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rrbp1; sb:cb489; wu:fc47a01
Summary
Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; digestive system; ectoderm; hatching gland; and mesoderm. Orthologous to human RRBP1 (ribosome binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See rrbp1b in Genome Data Viewer
Location:
chromosome: 22
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (25086921..25109867)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (25059297..25082243)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene double zinc ribbon and ankyrin repeat domains 1 Neighboring gene lysine acetyltransferase 14 Neighboring gene PET117 cytochrome c oxidase chaperone Neighboring gene si:dkeyp-20e4.8 Neighboring gene uncharacterized LOC108181182

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. eys (+/-) ; lrp5 (+/-) Zebrafish Reveals Lrp5 Can Be the Receptor of Retinol in the Visual Cycle. Takita S, et al. iScience, 2020 Dec 18. PMID 33251495, Free PMC Article
  2. Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo. Dickmeis T, et al. Genome Res, 2004 Feb. PMID 14718378, Free PMC Article
  3. Hepatic gene expression profiling using GeneChips in zebrafish exposed to 17alpha-methyldihydrotestosterone. Hoffmann JL, et al. Aquat Toxicol, 2008 Apr 28. PMID 18339436
  4. Molecular description of eye defects in the zebrafish Pax6b mutant, sunrise, reveals a Pax6b-dependent genetic network in the developing anterior chamber. Takamiya M, et al. PLoS One, 2015. PMID 25692557, Free PMC Article
  5. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC174456

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosome-binding protein 1b
Names
ribosome binding protein 1 homolog 180kDa (dog)
ribosome binding protein 1 homolog b (dog)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199431.2 → NP_955463.2  ribosome-binding protein 1b

    Status: VALIDATED

    Source sequence(s)
    BX294165
    UniProtKB/TrEMBL
    A0A8M1PCX5, Q1LXR3
    Related
    ENSDARP00000061116.5, ENSDART00000061117.6
    Conserved Domains (3) summary
    pfam05104
    Location:33 → 188
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    pfam07851
    Location:423 → 517
    TMPIT; TMPIT-like protein
    cl19219
    Location:546 → 638
    DUF342; Protein of unknown function (DUF342)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    25086921..25109867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005174040.4 → XP_005174097.1  ribosome-binding protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A0R4IGW7, A0A8M2BLC3
    Related
    ENSDARP00000133183.2, ENSDART00000158225.2
    Conserved Domains (4) summary
    COG4942
    Location:279 → 529
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    pfam05104
    Location:33 → 188
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    pfam07851
    Location:423 → 517
    TMPIT; TMPIT-like protein
    cl19219
    Location:546 → 638
    DUF342; Protein of unknown function (DUF342)

  2. XM_005174041.5 → XP_005174098.1  ribosome-binding protein 1b isoform X2

    UniProtKB/TrEMBL
    A0A2R8QNM4, A0A8M2BLF7
    Related
    ENSDARP00000154666.1, ENSDART00000192114.1
    Conserved Domains (3) summary
    pfam05104
    Location:33 → 188
    Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region
    pfam07851
    Location:423 → 517
    TMPIT; TMPIT-like protein
    cl19219
    Location:546 → 638
    DUF342; Protein of unknown function (DUF342)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395353.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    255901..280955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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