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rnf38 ring finger protein 38 [ Danio rerio (zebrafish) ]

Gene ID: 566820, updated on 28-Oct-2024

Summary

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Official Symbol
rnf38provided by ZNC
Official Full Name
ring finger protein 38provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8693
See related
Ensembl:ENSDARG00000062055 AllianceGenome:ZFIN:ZDB-GENE-030131-8693
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa94e11; wu:fa94e11; si:dkey-20n3.1
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF38 (ring finger protein 38). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See rnf38 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (18863095..18937045)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (18170123..18244110)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535985 Neighboring gene zgc:195282 Neighboring gene uncharacterized LOC101886347 Neighboring gene uncharacterized LOC137495484

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Metabolic regulation and antihyperglycemic properties of diet-derived PGG through transcriptomic and metabolomic profiling. Zhang AN, et al. Food Funct, 2023 Jun 19. PMID 37232296
  2. Rmrp Mutation Disrupts Chondrogenesis and Bone Ossification in Zebrafish Model of Cartilage-Hair Hypoplasia via Enhanced Wnt/β-Catenin Signaling. Sun X, et al. J Bone Miner Res, 2019 Nov. PMID 31237961
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 38; E3 ubiquitin-protein ligase RNF38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    18863095..18937045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690108.9 → XP_695200.4  E3 ubiquitin-protein ligase RNF38

    UniProtKB/TrEMBL
    A0A8N7TDP5, E7FDX7
    Related
    ENSDARP00000113766.1, ENSDART00000139241.2
    Conserved Domains (1) summary
    pfam13639
    Location:621 → 662
    zf-RING_2; Ring finger domain
Nucleotide Protein Strain
Heading Accession and Version

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