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arrdc3a arrestin domain containing 3a [ Danio rerio (zebrafish) ]

Gene ID: 566685, updated on 12-Sep-2024

Summary

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Official Symbol
arrdc3aprovided by ZNC
Official Full Name
arrestin domain containing 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2913
See related
Ensembl:ENSDARG00000052690 AllianceGenome:ZFIN:ZDB-GENE-030131-2913
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
arrdc3; wu:fc21e01; zgc:136956; si:dkey-172m14.3
Summary
Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in liver. Orthologous to human ARRDC3 (arrestin domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See arrdc3a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (48985859..48995955, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (48334348..48344444, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene LysM, putative peptidoglycan-binding, domain containing 3 Neighboring gene adhesion G protein-coupled receptor V1 Neighboring gene si:dkey-172m14.1 Neighboring gene arrestin domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Temporal and spatial expression of zebrafish mctp genes and evaluation of frameshift alleles of mctp2b. Espino-Saldaña AE, et al. Gene, 2020 May 15. PMID 32001375
  2. On the origins of arrestin and rhodopsin. Alvarez CE. BMC Evol Biol, 2008 Jul 29. PMID 18664266, Free PMC Article
  3. Def functions as a cell autonomous factor in organogenesis of digestive organs in zebrafish. Tao T, et al. PLoS One, 2013. PMID 23593122, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in early endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
arrestin domain-containing protein 3a
Names
arrestin domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080029.1 → NP_001073498.1  arrestin domain-containing protein 3a

    See identical proteins and their annotated locations for NP_001073498.1

    Status: PROVISIONAL

    Source sequence(s)
    BC117667
    UniProtKB/TrEMBL
    A0A8M1NB97, Q1ECU3
    Related
    ENSDARP00000069080.3, ENSDART00000074592.4
    Conserved Domains (2) summary
    pfam00339
    Location:22 → 165
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain
    pfam02752
    Location:188 → 311
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    48985859..48995955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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