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VTRNA1-3 vault RNA 1-3 [ Homo sapiens (human) ]

Gene ID: 56662, updated on 10-Oct-2023

Summary

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Official Symbol
VTRNA1-3provided by HGNC
Official Full Name
vault RNA 1-3provided by HGNC
Primary source
HGNC:HGNC:12656
See related
Ensembl:ENSG00000202515 MIM:612697; AllianceGenome:HGNC:12656
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
VR3; HVG3; hvg-3; VAULTRC3
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Genomic context

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See VTRNA1-3 in Genome Data Viewer
Location:
5q31.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (140726159..140726246)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (141251549..141251636)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (140105744..140105831)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:140090124-140091323 Neighboring gene uncharacterized LOC105378198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23290 Neighboring gene Sharpr-MPRA regulatory region 6103 Neighboring gene vault RNA 1-1 Neighboring gene vault RNA 1-2 Neighboring gene ZFP14 zinc finger protein pseudogene Neighboring gene uncharacterized LOC124901089 Neighboring gene protocadherin alpha cluster, complex locus Neighboring gene protocadherin alpha 1 Neighboring gene protocadherin alpha 2 Neighboring gene protocadherin alpha 3 Neighboring gene protocadherin alpha 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Vaults are up-regulated in multidrug-resistant cancer cell lines. Kickhoefer VA, et al. J Biol Chem, 1998 Apr 10. PMID 9535882
  2. Epstein-barr virus-induced expression of a novel human vault RNA. Nandy C, et al. J Mol Biol, 2009 May 15. PMID 19298825
  3. Evolution of vault RNAs. Stadler PF, et al. Mol Biol Evol, 2009 Sep. PMID 19491402

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • vault RNA component 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026705.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF045145
    Related
    ENST00000365645.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    140726159..140726246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    141251549..141251636
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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