rbm46 RNA binding motif protein 46 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm46provided by ZNC
Official Full Name: RNA binding motif protein 46provided by ZNC
Primary source: ZFIN:ZDB-GENE-061013-298
See related: Ensembl:ENSDARG00000079452 AllianceGenome:ZFIN:ZDB-GENE-061013-298
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fe11d09; wu:fe11d09; zgc:153695
Summary: Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human RBM46 (RNA binding motif protein 46). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (10127209..10137452)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (9443098..9453341)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Rbm46, a novel germ cell-specific factor, modulates meiotic progression and spermatogenesis.
Title: Rbm46, a novel germ cell-specific factor, modulates meiotic progression and spermatogenesis.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

ha3057 (e-PCR)
- UniSTS:515633

fe11d09.x1 (e-PCR)
- UniSTS:196067

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within meiotic cell cycle	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within oogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within spermatogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: probable RNA-binding protein 46

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001080024.2 → NP_001073493.2 probable RNA-binding protein 46

Status: PROVISIONAL

Source sequence(s)

BC124720

UniProtKB/Swiss-Prot

Q08BH5

Related

ENSDARP00000099341.2, ENSDART00000110698.5

Conserved Domains (4) summary

cd12484
Location:58 → 134

RRM1_RBM46; RNA recognition motif 1 found in vertebrate RNA-binding protein 46 (RBM46)

cd12492
Location:136 → 220

RRM2_RBM46; RNA recognition motif 2 found in vertebrate RNA-binding protein 46 (RBM46)

pfam14709
Location:392 → 463

DND1_DSRM; double strand RNA binding domain from DEAD END PROTEIN 1

cl17169
Location:225 → 305

RRM_SF; RNA recognition motif (RRM) superfamily