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si:ch211-236h17.3 si:ch211-236h17.3 [ Danio rerio (zebrafish) ]

Gene ID: 565671, updated on 12-Sep-2024

Summary

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Official Symbol
si:ch211-236h17.3provided by ZNC
Official Full Name
si:ch211-236h17.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-738
See related
Ensembl:ENSDARG00000004018
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:ch211-236h17.3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (34990533..35026115)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (34891465..34927483)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489141 Neighboring gene uncharacterized LOC137489187 Neighboring gene solute carrier family 41 member 3 Neighboring gene Kruppel like factor 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. SLC41A1 is essential for magnesium homeostasis in vivo. Arjona FJ, et al. Pflugers Arch, 2019 Jun. PMID 30417250, Free PMC Article
  2. Chondroitin / dermatan sulfate modification enzymes in zebrafish development. Habicher J, et al. PLoS One, 2015. PMID 25793894, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    34990533..35026115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_688938.10 → XP_694030.1  carbohydrate sulfotransferase 11

    UniProtKB/TrEMBL
    A0A8N7UVE7, E7EXM4
    Related
    ENSDARP00000005165.7, ENSDART00000013449.8
    Conserved Domains (1) summary
    pfam03567
    Location:101 → 331
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

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