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si:ch211-215a10.4 si:ch211-215a10.4 [ Danio rerio (zebrafish) ]

Gene ID: 565228, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-215a10.4provided by ZNC
Official Full Name
si:ch211-215a10.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5518
See related
Ensembl:ENSDARG00000056165 AllianceGenome:ZFIN:ZDB-GENE-030131-5518
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd21a03; wu:fd21a03
Summary
Is expressed in female organism. Orthologous to human C6orf136 (chromosome 6 open reading frame 136). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See si:ch211-215a10.4 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (30450125..30468234)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30862812..30880921)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 1 Neighboring gene BCL2 associated athanogene 6, like Neighboring gene hippocalcin like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC162261

General protein information

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Preferred Names
uncharacterized protein C6orf136 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082846.1 → NP_001076315.1  uncharacterized protein C6orf136 homolog

    Status: PROVISIONAL

    Source sequence(s)
    BX510301
    UniProtKB/TrEMBL
    A0A8M1NDD3, A3KPX0
    Related
    ENSDARP00000068194.5, ENSDART00000073704.7
    Conserved Domains (1) summary
    pfam10184
    Location:247 → 372
    DUF2358; Uncharacterized conserved protein (DUF2358)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    30450125..30468234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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