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ints5 integrator complex subunit 5 [ Danio rerio (zebrafish) ]

Gene ID: 564642, updated on 2-Nov-2024

Summary

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Official Symbol
ints5provided by ZNC
Official Full Name
integrator complex subunit 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-090908-2
See related
Ensembl:ENSDARG00000077943 AllianceGenome:ZFIN:ZDB-GENE-090908-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Acts upstream of or within regulation of RNA splicing. Predicted to be part of integrator complex. Orthologous to human INTS5 (integrator complex subunit 5). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ints5 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (45551979..45558651, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (46565256..46571390, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene si:ch211-114c17.1 Neighboring gene glucosidase II alpha subunit b Neighboring gene retinoic acid receptor responder 3 Neighboring gene retinoic acid receptor responder 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within regulation of RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of integrator complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
integrator complex subunit 5
Names
zmp:0000001187

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    45551979..45558651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_687970.8 → XP_693062.2  integrator complex subunit 5

    UniProtKB/TrEMBL
    A0A0R4IY96, A0A8N7TB96
    Related
    ENSDARP00000141758.1, ENSDART00000165060.2
    Conserved Domains (2) summary
    pfam14837
    Location:26 → 243
    INTS5_N; Integrator complex subunit 5 N-terminus
    pfam14838
    Location:266 → 1014
    INTS5_C; Integrator complex subunit 5 C-terminus
Nucleotide Protein
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