ciarta circadian associated repressor of transcription a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ciartaprovided by ZNC
Official Full Name: circadian associated repressor of transcription aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7016
See related: Ensembl:ENSDARG00000058094 AllianceGenome:ZFIN:ZDB-GENE-030131-7016
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ciart; chrono; C1orf51; fk65b05; wu:fk65b05; si:ch211-284a13.1
Summary: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in circadian regulation of gene expression and negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in pronephric duct. Orthologous to human CIART (circadian associated repressor of transcription). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 19

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (8928434..8940081, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (9009509..9021156, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables transcription cis-regulatory region binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in circadian regulation of gene expression	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within circadian regulation of gene expression	IEA Inferred from Electronic Annotation more info
involved_in negative regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: circadian associated repressor of transcription a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001327898.1 → NP_001314827.1 circadian associated repressor of transcription a

Status: PROVISIONAL

Source sequence(s)

BX248499, CU466434

UniProtKB/TrEMBL

A0A8M1P362, Q1LXW3

Related

ENSDARP00000043506.6, ENSDART00000043507.7

Conserved Domains (1) summary

pfam15673
Location:90 → 193

DUF4664; Domain of unknown function (DUF4664)