U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

phf20a PHD finger protein 20, a [ Danio rerio (zebrafish) ]

Gene ID: 563332, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
phf20aprovided by ZNC
Official Full Name
PHD finger protein 20, aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-270
See related
Ensembl:ENSDARG00000002750 AllianceGenome:ZFIN:ZDB-GENE-070912-270
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-274p22.2
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of MLL1 complex and NSL complex. Orthologous to human PHF20 (PHD finger protein 20). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See phf20a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (25044096..25063586)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (24806465..24825964)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene sulfatase 2a Neighboring gene Rho GTPase activating protein 46a Neighboring gene ndrg family member 3a Neighboring gene Src like adaptor 2a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution and genomic organization of muscle microRNAs in fish genomes. Nachtigall PG, et al. BMC Evol Biol, 2014 Sep 25. PMID 25253178, Free PMC Article
  2. Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. Petit D, et al. Mol Biol Evol, 2015 Apr. PMID 25534026, Free PMC Article
  3. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of MLL1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of NSL complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PHD finger protein 20

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    25044096..25063586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479839.2 → XP_021335514.1  PHD finger protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QDM8, A8HAK1
    Related
    ENSDARP00000111291.2, ENSDART00000123263.4
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:595 → 638
    PHD_SF; PHD finger superfamily

  2. XM_021479841.2 → XP_021335516.1  PHD finger protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PAS5
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:595 → 638
    PHD_SF; PHD finger superfamily

  3. XM_021479840.2 → XP_021335515.1  PHD finger protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QM11
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:594 → 637
    PHD_SF; PHD finger superfamily

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394821.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    233355..252845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_686696.9 → XP_691788.2  PHD finger protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QDM8, A8HAK1
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:595 → 638
    PHD_SF; PHD finger superfamily

  2. XM_021472492.2 → XP_021328167.1  PHD finger protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PAS5
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:595 → 638
    PHD_SF; PHD finger superfamily

  3. XM_009306052.3 → XP_009304327.1  PHD finger protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QM11
    Conserved Domains (3) summary
    cd04508
    Location:90 → 135
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl17705
    Location:3 → 68
    MBT; mbt repeat
    cl22851
    Location:594 → 637
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools