syngr2a synaptogyrin 2a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: syngr2aprovided by ZNC
Official Full Name: synaptogyrin 2aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070112-1292
See related: AllianceGenome:ZFIN:ZDB-GENE-070112-1292
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fj66d05; zgc:153950
Summary: Predicted to be located in membrane. Orthologous to human SYNGR2 (synaptogyrin 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (57766627..57779801, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (57696103..57709295, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: synaptogyrin-2a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001320463.1 → NP_001307392.1 synaptogyrin-2a

Status: VALIDATED

Source sequence(s)

BC129038, CN320653, CU570690

UniProtKB/TrEMBL

A1L1F7

Conserved Domains (1) summary

pfam01284
Location:20 → 131

MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

57766627..57779801 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001080585.1: Suppressed sequence

Description

NM_001080585.1: This RefSeq was removed because currently there is insufficient support for the transcript.