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lrrc75a leucine rich repeat containing 75A [ Danio rerio (zebrafish) ]

Gene ID: 562936, updated on 12-Sep-2024

Summary

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Official Symbol
lrrc75aprovided by ZNC
Official Full Name
leucine rich repeat containing 75Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-131127-289
See related
Ensembl:ENSDARG00000076834 AllianceGenome:ZFIN:ZDB-GENE-131127-289
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-151p21.7
Summary
Orthologous to human LRRC75A (leucine rich repeat containing 75A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See lrrc75a in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (24691268..24736875)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (24755937..24801610)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 199 Neighboring gene polymerase (DNA-directed), delta interacting protein 2 Neighboring gene v-crk avian sarcoma virus CT10 oncogene homolog Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
leucine-rich repeat-containing protein 75A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    24691268..24736875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_686301.6 → XP_691393.2  leucine-rich repeat-containing protein 75A

    UniProtKB/TrEMBL
    A0A8N7UUY9, E7F2Y2
    Related
    ENSDARP00000100990.2, ENSDART00000110618.4
    Conserved Domains (1) summary
    cl26161
    Location:170 → 259
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394947.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    450506..496113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472945.2 → XP_021328620.1  leucine-rich repeat-containing protein 75A

    UniProtKB/TrEMBL
    A0A8N7UUY9, E7F2Y2
    Conserved Domains (1) summary
    cl26161
    Location:170 → 259
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395323.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    42297..87904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474345.2 → XP_021330020.1  leucine-rich repeat-containing protein 75A

    UniProtKB/TrEMBL
    A0A8N7UUY9, E7F2Y2
    Conserved Domains (1) summary
    cl26161
    Location:170 → 259
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein Strain
Heading Accession and Version

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