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stx7l syntaxin 7-like [ Danio rerio (zebrafish) ]

Gene ID: 562669, updated on 5-Oct-2024

Summary

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Official Symbol
stx7lprovided by ZNC
Official Full Name
syntaxin 7-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-35
See related
Ensembl:ENSDARG00000069208 AllianceGenome:ZFIN:ZDB-GENE-041014-35
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-7c18.2
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX7 (syntaxin 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See stx7l in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (46213570..46232306)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (46309666..46328443)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene trace amine-associated receptor 10 Neighboring gene trace amine associated receptor 13c Neighboring gene trace amine associated receptor 15 Neighboring gene si:dkey-246e3.4 Neighboring gene trace amine associated receptor 14a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in vesicle docking IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in synaptic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
syntaxin-7
Names
gpr126

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    46213570..46232306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200760.6 → XP_003200808.1  syntaxin-7 isoform X1

    UniProtKB/TrEMBL
    A0A0A0MPL4, A0A8M9PYX3
    Related
    ENSDARP00000091305.5, ENSDART00000100532.6
    Conserved Domains (2) summary
    cd15875
    Location:164 → 223
    SNARE_syntaxin7; SNARE motif of syntaxin 7
    pfam14523
    Location:16 → 116
    Syntaxin_2; Syntaxin-like protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395076.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    340758..355298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473379.2 → XP_021329054.1  syntaxin-7 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PW65
    Conserved Domains (2) summary
    cd15875
    Location:164 → 223
    SNARE_syntaxin7; SNARE motif of syntaxin 7
    pfam14523
    Location:16 → 116
    Syntaxin_2; Syntaxin-like protein

  2. XM_068218950.1 → XP_068075051.1  syntaxin-7 isoform X3

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395345.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    197859..216543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474444.2 → XP_021330119.1  syntaxin-7 isoform X1

    UniProtKB/TrEMBL
    A0A0A0MPL4, A0A8M9PYX3
    Conserved Domains (2) summary
    cd15875
    Location:164 → 223
    SNARE_syntaxin7; SNARE motif of syntaxin 7
    pfam14523
    Location:16 → 116
    Syntaxin_2; Syntaxin-like protein
Nucleotide Protein Strain
Heading Accession and Version

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