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elfn1a extracellular leucine-rich repeat and fibronectin type III domain containing 1a [ Danio rerio (zebrafish) ]

Gene ID: 562570, updated on 28-Oct-2024

Summary

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Official Symbol
elfn1aprovided by ZNC
Official Full Name
extracellular leucine-rich repeat and fibronectin type III domain containing 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-120927-2
See related
AllianceGenome:ZFIN:ZDB-GENE-120927-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
elfn1
Summary
Predicted to be located in membrane. Used to study schizophrenia. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
human mouse all
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Genomic context

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See elfn1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (42544468..42746607, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (46053262..46255616, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490733 Neighboring gene uncharacterized LOC101882679 Neighboring gene transmembrane protein 184a Neighboring gene proteasome (prosome, macropain) assembly chaperone 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characterization of paralogous uncx transcription factor encoding genes in zebrafish. Nittoli V, et al. Gene X, 2019 Jun. PMID 31193955, Free PMC Article
  2. Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Thyme SB, et al. Cell, 2019 Apr 4. PMID 30929901, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein ELFN1
Names
extracellular leucine-rich repeat and fibronectin type III domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    42544468..42746607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164194.5 → XP_005164251.1  protein ELFN1

    See identical proteins and their annotated locations for XP_005164251.1

    UniProtKB/TrEMBL
    A0A8M2BBN8
    Conserved Domains (3) summary
    TIGR00864
    Location:171 → 264
    PCC; polycystin cation channel protein
    sd00031
    Location:74 → 94
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 153
    LRR_8; Leucine rich repeat

  2. XM_005164193.5 → XP_005164250.1  protein ELFN1

    See identical proteins and their annotated locations for XP_005164250.1

    UniProtKB/TrEMBL
    A0A8M2BBN8
    Conserved Domains (3) summary
    TIGR00864
    Location:171 → 264
    PCC; polycystin cation channel protein
    sd00031
    Location:74 → 94
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 153
    LRR_8; Leucine rich repeat

  3. XM_068219357.1 → XP_068075458.1  protein ELFN1

Nucleotide Protein
Heading Accession and Version

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