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si:ch73-103b11.2 si:ch73-103b11.2 [ Danio rerio (zebrafish) ]

Gene ID: 562530, updated on 17-Sep-2024

Summary

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Official Symbol
si:ch73-103b11.2provided by ZNC
Official Full Name
si:ch73-103b11.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-080917-14
See related
AllianceGenome:ZFIN:ZDB-GENE-080917-14
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7154419
Summary
Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization. Predicted to be active in actin cytoskeleton. Is expressed in habenula; lens; and solid lens vesicle. Orthologous to human MPRIP (myosin phosphatase Rho interacting protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:ch73-103b11.2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39227031..39335007)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39339101..39447051)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 1-like Neighboring gene essential meiotic structure-specific endonuclease subunit 2 Neighboring gene potassium inwardly rectifying channel subfamily J member 12a Neighboring gene protein starmaker-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein outspread

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    39227031..39335007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162902.5 → XP_005162959.1  protein outspread isoform X2

    See identical proteins and their annotated locations for XP_005162959.1

    UniProtKB/TrEMBL
    A0A8M3AW87
    Conserved Domains (4) summary
    COG0419
    Location:1847 → 2413
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01236
    Location:19 → 154
    PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
    cd13275
    Location:552 → 653
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam00169
    Location:552 → 645
    PH; PH domain

  2. XM_009297658.4 → XP_009295933.1  protein outspread isoform X2

    See identical proteins and their annotated locations for XP_009295933.1

    UniProtKB/TrEMBL
    A0A8M3AW87
    Conserved Domains (4) summary
    COG0419
    Location:1847 → 2413
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01236
    Location:19 → 154
    PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
    cd13275
    Location:552 → 653
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam00169
    Location:552 → 645
    PH; PH domain

  3. XM_068217285.1 → XP_068073386.1  protein outspread isoform X4

  4. XM_068217286.1 → XP_068073387.1  protein outspread isoform X4

  5. XM_005162900.5 → XP_005162957.1  protein outspread isoform X1

    UniProtKB/TrEMBL
    A0A8M2B9V7
    Conserved Domains (4) summary
    COG0419
    Location:1847 → 2413
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01236
    Location:19 → 154
    PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
    cd13275
    Location:552 → 653
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam00169
    Location:552 → 645
    PH; PH domain

  6. XM_005162901.5 → XP_005162958.1  protein outspread isoform X3

    UniProtKB/TrEMBL
    A0A8M2B9W3
    Conserved Domains (4) summary
    COG0419
    Location:1834 → 2400
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01236
    Location:19 → 154
    PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
    cd13275
    Location:552 → 653
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam00169
    Location:552 → 645
    PH; PH domain

  7. XM_005162903.5 → XP_005162960.1  protein outspread isoform X5

    UniProtKB/TrEMBL
    A0A8M2B9W0
    Conserved Domains (4) summary
    COG0419
    Location:1685 → 2251
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd01236
    Location:19 → 154
    PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
    cd13275
    Location:390 → 491
    PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
    pfam00169
    Location:390 → 483
    PH; PH domain
Nucleotide Protein Strain
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