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nsl1 NSL1 component of MIS12 kinetochore complex [ Danio rerio (zebrafish) ]

Gene ID: 562522, updated on 27-Mar-2024

Summary

Official Symbol
nsl1provided by ZNC
Official Full Name
NSL1 component of MIS12 kinetochore complexprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-362
See related
Ensembl:ENSDARG00000024471 AllianceGenome:ZFIN:ZDB-GENE-041014-362
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-147d7.3
Summary
Predicted to be involved in mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See nsl1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (37814464..37820929, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (37911585..37918050, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene activating transcription factor 3 Neighboring gene basic leucine zipper transcription factor, ATF-like 3 Neighboring gene TatD DNase domain containing 3 Neighboring gene spermatogenesis associated 45

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
kinetochore-associated protein NSL1 homolog
Names
NSL1, MIND kinetochore complex component, homolog
NSL1, MIS12 kinetochore complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025521.2NP_001020692.1  kinetochore-associated protein NSL1 homolog

    See identical proteins and their annotated locations for NP_001020692.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115062
    UniProtKB/TrEMBL
    A4FUK4, Q5RGS8
    Related
    ENSDARP00000030404.8, ENSDART00000032978.10
    Conserved Domains (1) summary
    pfam08641
    Location:61173
    Mis14; Kinetochore protein Mis14 like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    37814464..37820929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)