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shkbp1 SH3KBP1 binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 562395, updated on 2-Nov-2024

Summary

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Official Symbol
shkbp1provided by ZNC
Official Full Name
SH3KBP1 binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130415-1
See related
Ensembl:ENSDARG00000105050 AllianceGenome:ZFIN:ZDB-GENE-130415-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within protein homooligomerization. Orthologous to human SHKBP1 (SH3KBP1 binding protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See shkbp1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (48953813..48972987)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (48959039..48977961)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 37 Neighboring gene uncharacterized LOC100002134 Neighboring gene estrogen-related receptor delta Neighboring gene latent transforming growth factor beta binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within protein homooligomerization IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SH3KBP1-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    48953813..48972987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001920900.8 → XP_001920935.4  SH3KBP1-binding protein 1

    UniProtKB/TrEMBL
    A0A8M1QHH8, E7FFI2
    Related
    ENSDARP00000137217.1, ENSDART00000158104.2
    Conserved Domains (3) summary
    smart00225
    Location:6 → 96
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG2319
    Location:308 → 569
    WD40; WD40 repeat [General function prediction only]
    pfam02214
    Location:8 → 100
    BTB_2; BTB/POZ domain
Nucleotide Protein
Heading Accession and Version

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