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zgc:171459 zgc:171459 [ Danio rerio (zebrafish) ]

Gene ID: 562056, updated on 2-Nov-2024

Summary

Official Symbol
zgc:171459provided by ZNC
Official Full Name
zgc:171459provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2059
See related
Ensembl:ENSDARG00000077248 AllianceGenome:ZFIN:ZDB-GENE-030131-2059
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb95f07; wu:fb95f07
Summary
Predicted to be involved in cytoplasmic sequestering of protein. Predicted to be active in cytoskeleton. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See zgc:171459 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19666621..19668183)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19568670..19570232)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene G-2 and S-phase expressed 1 Neighboring gene ATPase plasma membrane Ca2+ transporting 1b Neighboring gene zgc:113426 Neighboring gene myxovirus (influenza virus) resistance H

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cytoplasmic sequestering of protein IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC562056

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111165.1NP_001104635.1  uncharacterized protein LOC562056

    See identical proteins and their annotated locations for NP_001104635.1

    Status: PREDICTED

    Source sequence(s)
    BC153929
    UniProtKB/TrEMBL
    A8KB19
    Related
    ENSDARP00000103275.2, ENSDART00000112746.4
    Conserved Domains (1) summary
    cl23759
    Location:2197
    GT1; GT1, myb-like, SANT family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    19666621..19668183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)