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ubn2b ubinuclein 2b [ Danio rerio (zebrafish) ]

Gene ID: 561642, updated on 28-Oct-2024

Summary

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Official Symbol
ubn2bprovided by ZNC
Official Full Name
ubinuclein 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-768
See related
Ensembl:ENSDARG00000100508 AllianceGenome:ZFIN:ZDB-GENE-060503-768
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-175l6.9
Summary
Predicted to be involved in chromatin organization. Predicted to be active in nucleus. Orthologous to human UBN2 (ubinuclein 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See ubn2b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (7839880..7897271, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7954040..8011447, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene JunB proto-oncogene, AP-1 transcription factor subunit b Neighboring gene hook microtubule-tethering protein 2 Neighboring gene telomerase RNA component interacting RNase Neighboring gene uncharacterized LOC110439335 Neighboring gene tripartite motif containing 35-21 Neighboring gene uncharacterized LOC110439334 Neighboring gene tripartite motif containing 35-25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubinuclein-2b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104940.1 → NP_001098410.1  ubinuclein-2b

    See identical proteins and their annotated locations for NP_001098410.1

    Status: PROVISIONAL

    Source sequence(s)
    BC152496
    UniProtKB/TrEMBL
    A0A8M1NEJ6, A7MD64
    Related
    ENSDARP00000140343.1, ENSDART00000169757.2
    Conserved Domains (2) summary
    pfam08729
    Location:140 → 189
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:389 → 588
    UBN_AB; Ubinuclein conserved middle domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    7839880..7897271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164318.4 → XP_005164375.1  ubinuclein-2b isoform X1

    UniProtKB/TrEMBL
    A0A2R8PZN3, A0A8M2BBI3
    Related
    ENSDARP00000146730.1, ENSDART00000185232.1
    Conserved Domains (2) summary
    pfam08729
    Location:140 → 189
    HUN; HPC2 and ubinuclein domain
    pfam14075
    Location:389 → 588
    UBN_AB; Ubinuclein conserved middle domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394518.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    3363..42482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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