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igsf5a immunoglobulin superfamily, member 5a [ Danio rerio (zebrafish) ]

Gene ID: 561211, updated on 12-Sep-2024

Summary

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Official Symbol
igsf5aprovided by ZNC
Official Full Name
immunoglobulin superfamily, member 5aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-182
See related
Ensembl:ENSDARG00000087983 AllianceGenome:ZFIN:ZDB-GENE-091204-182
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
igsf5; si:ch211-231m12.2
Summary
Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See igsf5a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (39030701..39055516, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (39087294..39112430, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene Down syndrome cell adhesion molecule a Neighboring gene uncharacterized LOC137496621 Neighboring gene Purkinje cell protein 4a Neighboring gene high mobility group nucleosome binding domain 1b Neighboring gene mitochondrial intermediate peptidase b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Direct activation of the Mauthner cell by electric field pulses drives ultrarapid escape responses. Tabor KM, et al. J Neurophysiol, 2014 Aug 15. PMID 24848468, Free PMC Article
  2. The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Postlethwait JH, et al. Biol Open, 2021 Mar 23. PMID 33757938, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
immunoglobulin superfamily member 5
Names
immunoglobulin superfamily, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    39030701..39055516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_684617.10 → XP_689709.3  immunoglobulin superfamily member 5

    Related
    ENSDARP00000147550.1, ENSDART00000187437.1
    Conserved Domains (2) summary
    pfam07679
    Location:21 → 115
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:138 → 201
    Ig; Immunoglobulin domain

  2. XM_068224011.1 → XP_068080112.1  immunoglobulin superfamily member 5

    Related
    ENSDARP00000117822.1, ENSDART00000144036.2
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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