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ehbp1 EH domain binding protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 560857, updated on 17-Sep-2024

Summary

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Official Symbol
ehbp1provided by ZNC
Official Full Name
EH domain binding protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-091006-4
See related
Ensembl:ENSDARG00000043643 AllianceGenome:ZFIN:ZDB-GENE-091006-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc92e03; wu:fc92e03; si:ch211-63b16.5
Summary
Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Orthologous to human EHBP1 (EH domain binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ehbp1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (24109185..24315315)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (24090699..24296914)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene si:ch211-63b16.4 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2b Neighboring gene uncharacterized LOC137488098 Neighboring gene uncharacterized LOC108179765 Neighboring gene orthodenticle homeobox 1 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene malate dehydrogenase 1Ab, NAD (soluble)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Irimia M, et al. Genome Res, 2012 Dec. PMID 22722344, Free PMC Article
  2. In vitro characterization of zebrafish (Danio rerio) organic anion transporters Oat2a-e. Dragojević J, et al. Toxicol In Vitro, 2018 Feb. PMID 29030288
  3. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
EH domain-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    24109185..24315315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158531.5 → XP_005158588.1  EH domain-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B4X7
    Conserved Domains (3) summary
    pfam00307
    Location:469 → 563
    CH; Calponin homology (CH) domain
    pfam10358
    Location:12 → 165
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    pfam12130
    Location:1113 → 1239
    DUF3585; Protein of unknown function (DUF3585)

  2. XM_001919697.8 → XP_001919732.2  EH domain-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M1QH99
    Conserved Domains (3) summary
    pfam00307
    Location:469 → 563
    CH; Calponin homology (CH) domain
    pfam10358
    Location:12 → 165
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    pfam12130
    Location:1112 → 1238
    DUF3585; Protein of unknown function (DUF3585)

  3. XM_005158533.5 → XP_005158590.1  EH domain-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M2B5E5
    Conserved Domains (3) summary
    pfam00307
    Location:469 → 563
    CH; Calponin homology (CH) domain
    pfam10358
    Location:12 → 165
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    pfam12130
    Location:1053 → 1179
    DUF3585; Protein of unknown function (DUF3585)

  4. XM_068214587.1 → XP_068070688.1  EH domain-binding protein 1 isoform X5

    Related
    ENSDARP00000153366.1, ENSDART00000180123.1

  5. XM_005158532.5 → XP_005158589.1  EH domain-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M2B5F3
    Conserved Domains (3) summary
    pfam00307
    Location:438 → 532
    CH; Calponin homology (CH) domain
    pfam10358
    Location:12 → 165
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    pfam12130
    Location:1082 → 1208
    DUF3585; Protein of unknown function (DUF3585)

  6. XM_009293058.4 → XP_009291333.1  EH domain-binding protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8M3ARD1, X1WCN4
    Related
    ENSDARP00000127979.1, ENSDART00000156251.3
    Conserved Domains (3) summary
    pfam00307
    Location:438 → 532
    CH; Calponin homology (CH) domain
    pfam10358
    Location:12 → 165
    NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    pfam12130
    Location:1022 → 1148
    DUF3585; Protein of unknown function (DUF3585)
Nucleotide Protein Strain
Heading Accession and Version

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