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bend7 BEN domain containing 7 [ Danio rerio (zebrafish) ]

Gene ID: 560711, updated on 17-Sep-2024

Summary

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Official Symbol
bend7provided by ZNC
Official Full Name
BEN domain containing 7provided by ZNC
Primary source
ZFIN:ZDB-GENE-050419-200
See related
Ensembl:ENSDARG00000063186 AllianceGenome:ZFIN:ZDB-GENE-050419-200
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-220f12.4
Summary
Orthologous to human BEND7 (BEN domain containing 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See bend7 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (8383216..8402086, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (8425800..8438208, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene carnitine palmitoyltransferase 1B (muscle) Neighboring gene selenophosphate synthetase 1 Neighboring gene uncharacterized LOC108179947 Neighboring gene PRP18 pre-mRNA processing factor 18 homolog (yeast)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BEN domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    8383216..8402086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214876.1 → XP_068070977.1  BEN domain-containing protein 7 isoform X2

    Related
    ENSDARP00000146871.1, ENSDART00000193830.1

  2. XM_017352018.3 → XP_017207507.2  BEN domain-containing protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z224
    Related
    ENSDARP00000119613.1, ENSDART00000136512.2
    Conserved Domains (1) summary
    smart01025
    Location:307 → 390
    BEN; The BEN domain is found in diverse animal proteins

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395004.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    11089..27399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068218890.1 → XP_068074991.1  BEN domain-containing protein 7 isoform X3

  2. XM_021473233.2 → XP_021328908.1  BEN domain-containing protein 7 isoform X4

    UniProtKB/TrEMBL
    A0A8M9PPE5
    Conserved Domains (1) summary
    smart01025
    Location:307 → 390
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_021473232.2 → XP_021328907.1  BEN domain-containing protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PCY1
    Conserved Domains (1) summary
    smart01025
    Location:307 → 390
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein
Heading Accession and Version

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