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Samhd1 SAM domain and HD domain, 1 [ Mus musculus (house mouse) ]

Gene ID: 56045, updated on 2-Nov-2024

Summary

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Official Symbol
Samhd1provided by MGI
Official Full Name
SAM domain and HD domain, 1provided by MGI
Primary source
MGI:MGI:1927468
See related
Ensembl:ENSMUSG00000027639 AllianceGenome:MGI:1927468
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mg11; mSAMHD1; E330031J07Rik
Summary
Enables dGTPase activity. Involved in several processes, including negative regulation of type I interferon-mediated signaling pathway; protein homotetramerization; and somatic hypermutation of immunoglobulin genes. Predicted to be located in nucleoplasm; site of double-strand break; and tetraspanin-enriched microdomain. Predicted to be active in nucleus. Is expressed in left lung; right lung; and thymus primordium. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Chilblain lupus; acute myeloid leukemia; hepatitis B; and hepatitis C. Orthologous to human SAMHD1 (SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in spleen adult (RPKM 38.6), lung adult (RPKM 21.3) and 26 other tissues See more
Orthologs
human all
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Genomic context

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See Samhd1 in Genome Data Viewer
Location:
2 H1; 2 78.0 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (156939454..156977016, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (157097534..157135096, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene DSN1 homolog, MIS12 kinetochore complex component Neighboring gene microtubule crosslinking factor 2 Neighboring gene STARR-seq mESC enhancer starr_06195 Neighboring gene STARR-seq mESC enhancer starr_06196 Neighboring gene TBC/LysM associated domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_06197 Neighboring gene STARR-positive B cell enhancer ABC_E6008 Neighboring gene STARR-positive B cell enhancer ABC_E7876 Neighboring gene STARR-positive B cell enhancer ABC_E2649 Neighboring gene STARR-seq mESC enhancer starr_06198 Neighboring gene RB transcriptional corepressor like 1 Neighboring gene Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) Neighboring gene STARR-positive B cell enhancer ABC_E4514 Neighboring gene STARR-positive B cell enhancer ABC_E7877 Neighboring gene predicted gene, 57690

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The SAMHD1 knockout mouse model: in vivo veritas? Roesch F, et al. EMBO J, 2013 Sep 11. PMID 23963314, Free PMC Article
  2. Deficiency for SAMHD1 activates MDA5 in a cGAS/STING-dependent manner. Schumann T, et al. J Exp Med, 2023 Jan 2. PMID 36346347, Free PMC Article
  3. SAMHD1 Promotes the Antiretroviral Adaptive Immune Response in Mice Exposed to Lipopolysaccharide. Barrett B, et al. J Immunol, 2022 Jan 15. PMID 34893529, Free PMC Article
  4. Elimination of rNMPs from mitochondrial DNA has no effect on its stability. Wanrooij PH, et al. Proc Natl Acad Sci U S A, 2020 Jun 23. PMID 32513727, Free PMC Article
  5. SAMHD1 restricts HIV-1 replication and regulates interferon production in mouse myeloid cells. Zhang R, et al. PLoS One, 2014. PMID 24586870, Free PMC Article

See all (51) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SAMHD1 Attenuates Acute Inflammation by Maintaining Mitochondrial Function in Macrophages via Interaction with VDAC1.
    Title: SAMHD1 Attenuates Acute Inflammation by Maintaining Mitochondrial Function in Macrophages via Interaction with VDAC1.
  2. Deficiency for SAMHD1 activates MDA5 in a cGAS/STING-dependent manner.
    Title: Deficiency for SAMHD1 activates MDA5 in a cGAS/STING-dependent manner.
  3. SAMHD1 Promotes the Antiretroviral Adaptive Immune Response in Mice Exposed to Lipopolysaccharide.
    Title: SAMHD1 Promotes the Antiretroviral Adaptive Immune Response in Mice Exposed to Lipopolysaccharide.
  4. SAMHD1 Limits the Efficacy of Forodesine in Leukemia by Protecting Cells against the Cytotoxicity of dGTP.
    Title: SAMHD1 Limits the Efficacy of Forodesine in Leukemia by Protecting Cells against the Cytotoxicity of dGTP.
  5. Induction of Samhd1 by interferon gamma and lipopolysaccharide in murine macrophages requires IRF1.
    Title: Induction of Samhd1 by interferon gamma and lipopolysaccharide in murine macrophages requires IRF1.
  6. The phosphorylation of SAMHD1 in infected cells correlated with a reduced level of dNTP hydrolase activity and the loss of viral restriction.
    Title: A viral kinase counteracts in vivo restriction of murine cytomegalovirus by SAMHD1.
  7. SAMHD1 inhibits NF-kappaB activation by interacting with NF-kappaB1/2 and reducing phosphorylation of the NF-kappaB inhibitory protein IkappaBalpha. SAMHD1 also interacts with the inhibitor-kappaB kinase epsilon (IKKepsilon) and IFN regulatory factor 7 (IRF7), leading to the suppression of the IFN-I induction pathway by reducing IKKepsilon-mediated IRF7 phosphorylation. SAMHD1 down-regulates innate immune responses to ...
    Title: SAMHD1 suppresses innate immune responses to viral infections and inflammatory stimuli by inhibiting the NF-κB and interferon pathways.
  8. SAMHD1's restriction of dNTP supply enhances AID's mutagenicity and that the evolution of Ig hypermutation included the repurposing of antiviral mechanisms based on dNTP starvation.
    Title: SAMHD1 enhances immunoglobulin hypermutation by promoting transversion mutation.
  9. SAMHD1 crystal structure delineates the SAMHD1 allosteric activation process that governs SAMHD1 enzymatic activities.
    Title: The SAM domain of mouse SAMHD1 is critical for its activation and regulation.
  10. provide genetic evidence that cell-autonomous control of lentivirus infection in myeloid cells by SAMHD1 limits virus-induced production of interferons and the induction of co-stimulatory markers
    Title: Restriction by SAMHD1 Limits cGAS/STING-Dependent Innate and Adaptive Immune Responses to HIV-1.
Submit: New GeneRIF Correction See all GeneRIFs (20)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISO
Inferred from Sequence Orthology
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables RNA nuclease activity ISO
Inferred from Sequence Orthology
more info
  
NOT enables RNA nuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables dGTP binding ISO
Inferred from Sequence Orthology
more info
  
enables dGTP binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables dGTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dGTPase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dGTPase activity ISO
Inferred from Sequence Orthology
more info
  
enables deoxynucleoside triphosphate hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables nucleic acid binding ISO
Inferred from Sequence Orthology
more info
  
enables nucleic acid binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables single-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables single-stranded DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables triphosphoric monoester hydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables triphosphoric monoester hydrolase activity ISO
Inferred from Sequence Orthology
more info
  
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
  
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
  
involved_in DNA damage response ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in DNA strand resection involved in replication fork processing ISO
Inferred from Sequence Orthology
more info
  
involved_in DNA strand resection involved in replication fork processing ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in dATP catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in dATP catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in dGTP catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in dGTP catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in dGTP catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in defense response to virus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in defense response to virus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to virus ISO
Inferred from Sequence Orthology
more info
  
involved_in deoxyribonucleotide catabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in deoxyribonucleotide catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in double-strand break repair via homologous recombination ISO
Inferred from Sequence Orthology
more info
  
involved_in double-strand break repair via homologous recombination ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of type I interferon-mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of type I interferon-mediated signaling pathway ISO
Inferred from Sequence Orthology
more info
  
involved_in protein homotetramerization IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein homotetramerization ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of innate immune response ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of innate immune response ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in somatic hypermutation of immunoglobulin genes IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  
located_in site of double-strand break ISO
Inferred from Sequence Orthology
more info
  
located_in site of double-strand break ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in tetraspanin-enriched microdomain IEA
Inferred from Electronic Annotation
more info
  
located_in tetraspanin-enriched microdomain ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Names
IFN-gamma induced
SAM domain and HD domain-containing protein 1
dNTPase
interferon-gamma-inducible protein Mg11
NP_001132992.2
NP_001357539.1
NP_061339.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139520.2 → NP_001132992.2  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an additional frame-shifting exon in the 3' coding region, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK171565, BC067198, DV645873
    Consensus CDS
    CCDS50783.1
    UniProtKB/TrEMBL
    Q3TCJ7
    Related
    ENSMUSP00000124935.2, ENSMUST00000139263.8
    Conserved Domains (2) summary
    cd09508
    Location:42 → 111
    SAM_HD; SAM domain of HD-phosphohydrolase
    COG1078
    Location:116 → 495
    YdhJ; HD superfamily phosphohydrolase [General function prediction only]

  2. NM_001370610.1 → NP_001357539.1  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK152815, AK171565, AL669828
    UniProtKB/TrEMBL
    Q3U754
    Related
    ENSMUST00000149313.8
    Conserved Domains (2) summary
    cd09508
    Location:42 → 111
    SAM_HD; SAM domain of HD-phosphohydrolase
    COG1078
    Location:116 → 219
    YdhJ; HD superfamily phosphohydrolase [General function prediction only]

  3. NM_018851.4 → NP_061339.4  deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    BC067198, DV645873
    Consensus CDS
    CCDS16973.2
    UniProtKB/Swiss-Prot
    E9Q0K6, F8WJE0, Q3U5X2, Q543A4, Q60710, Q91VK8
    Related
    ENSMUSP00000059717.4, ENSMUST00000057725.10
    Conserved Domains (2) summary
    cd09508
    Location:42 → 111
    SAM_HD; SAM domain of HD-phosphohydrolase
    COG1078
    Location:116 → 573
    YdhJ; HD superfamily phosphohydrolase [General function prediction only]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    156939454..156977016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q60710.3 GenPept UniProtKB/Swiss-Prot:Q60710

Gene LinkOut

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