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dglucy D-glutamate cyclase [ Danio rerio (zebrafish) ]

Gene ID: 560387, updated on 12-Sep-2024

Summary

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Official Symbol
dglucyprovided by ZNC
Official Full Name
D-glutamate cyclaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070725-6
See related
Ensembl:ENSDARG00000005179 AllianceGenome:ZFIN:ZDB-GENE-070725-6
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
c14orf159; c17h14orf159
Summary
Predicted to enable D-glutamate cyclase activity. Predicted to be involved in glutamate metabolic process. Orthologous to human DGLUCY (D-glutamate cyclase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See dglucy in Genome Data Viewer
Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (38740620..38778894, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (38793035..38833179, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88C Neighboring gene ovarian cancer G-protein coupled receptor 1 Neighboring gene solute carrier family 24 member 4a Neighboring gene cysteine rich transmembrane BMP regulator 1 (chordin-like)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity. Jima DD, et al. Mol Immunol, 2009 Apr. PMID 19200601, Free PMC Article
  2. Many genes in fish have species-specific asymmetric rates of molecular evolution. Steinke D, et al. BMC Genomics, 2006 Feb 8. PMID 16466575, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables D-glutamate cyclase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in glutamate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
D-glutamate cyclase, mitochondrial
Names
c17h14orf159 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    38740620..38778894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001923855.7 → XP_001923890.1  D-glutamate cyclase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A0R4IQ88, A0A8M1QRC9
    Related
    ENSDARP00000138808.1, ENSDART00000168182.2
    Conserved Domains (2) summary
    pfam14336
    Location:301 → 613
    DUF4392; Domain of unknown function (DUF4392)
    cl01790
    Location:32 → 267
    DUF1445; Protein of unknown function (DUF1445)

  2. XM_068214682.1 → XP_068070783.1  D-glutamate cyclase, mitochondrial isoform X2

    Related
    ENSDARP00000062066.6, ENSDART00000062067.8
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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