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TRUGW13939_09538 uncharacterized protein [ Talaromyces rugulosus ]

Gene ID: 55997021, updated on 14-Dec-2023

Summary

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Gene symbol
TRUGW13939_09538
Gene description
uncharacterized protein
Locus tag
TRUGW13939_09538
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Talaromyces rugulosus (strain: W13939)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Talaromyces; Talaromyces sect. Islandici
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Genomic context

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See TRUGW13939_09538 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_049565.1 (2854700..2864337)

Chromosome V - NC_049565.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_049565.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_049565.1 Reference assembly

    Range
    2854700..2864337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035492660.1 → XP_035348553.1  uncharacterized protein TRUGW13939_09538 [Talaromyces rugulosus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7H8R7L2
    Conserved Domains (4) summary
    COG0666
    Location:966 → 1070
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00102
    Location:806 → 898
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    sd00045
    Location:995 → 1025
    ANK; ANK repeat [structural motif]
    pfam12584
    Location:2658 → 2855
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
Nucleotide Protein
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