si:rp71-1g18.1 si:rp71-1g18.1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:rp71-1g18.1provided by ZNC
Official Full Name: si:rp71-1g18.1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5470
See related: Ensembl:ENSDARG00000053792 AllianceGenome:ZFIN:ZDB-GENE-030131-5470
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fd19f11; bZ1G18.1; im:7149611; wu:fd19f11
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to several human genes including ZFP2 (ZFP2 zinc finger protein); ZNF239 (zinc finger protein 239); and ZNF322 (zinc finger protein 322). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

See si:rp71-1g18.1 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (38055507..38066183)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (38073201..38083845)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fi14g03.x1 (e-PCR)
- UniSTS:204466

fd19f11.x1 (e-PCR)
- UniSTS:204252

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC559922

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.