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dnajc16 DnaJ (Hsp40) homolog, subfamily C, member 16 [ Danio rerio (zebrafish) ]

Gene ID: 559762, updated on 12-Sep-2024

Summary

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Official Symbol
dnajc16provided by ZNC
Official Full Name
DnaJ (Hsp40) homolog, subfamily C, member 16provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-683
See related
Ensembl:ENSDARG00000059699 AllianceGenome:ZFIN:ZDB-GENE-130530-683
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC16 (DnaJ heat shock protein family (Hsp40) member C16). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See dnajc16 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (37497110..37516285, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (37394394..37413623, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene PTEN induced kinase 1 Neighboring gene agmatinase (putative) Neighboring gene torsin family 1 like 1 Neighboring gene uncharacterized LOC110438327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Variable phenotypes and penetrance between and within different zebrafish ciliary transition zone mutants. Wang J, et al. Dis Model Mech, 2022 Dec 1. PMID 36533556, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dnaJ homolog subfamily C member 16
Names
zmp:0000000680

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    37497110..37516285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_683131.8 → XP_688223.4  dnaJ homolog subfamily C member 16 isoform X2

    UniProtKB/TrEMBL
    A0A8N7UUU1
    Related
    ENSDARP00000077702.6, ENSDART00000083267.7
    Conserved Domains (2) summary
    cd02963
    Location:133 → 242
    TRX_DnaJ; TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) ...
    pfam00226
    Location:29 → 90
    DnaJ; DnaJ domain

  2. XM_005166214.5 → XP_005166271.1  dnaJ homolog subfamily C member 16 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDP4
    Conserved Domains (2) summary
    cd02963
    Location:133 → 242
    TRX_DnaJ; TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) ...
    pfam00226
    Location:29 → 90
    DnaJ; DnaJ domain
Nucleotide Protein
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