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hist1h2a5 histone cluster 1 H2A family member 5 [ Danio rerio (zebrafish) ]

Gene ID: 559220, updated on 17-Aug-2024

Summary

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Official Symbol
hist1h2a5provided by ZNC
Official Full Name
histone cluster 1 H2A family member 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-77
See related
Ensembl:ENSDARG00000114133 AllianceGenome:ZFIN:ZDB-GENE-131121-77
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-261m9.15
Summary
Predicted to enable DNA binding activity. Predicted to be involved in heterochromatin assembly. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to human H2AC21 (H2A clustered histone 21). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: 25
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (35151778..35152374, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (34646598..34647383, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene si:dkey-261m9.17 Neighboring gene zgc:113984 Neighboring gene zgc:153405 Neighboring gene anoctamin-9-like Neighboring gene anoctamin 9a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel O-GlcNAcylation on Ser(40) of canonical H2A isoforms specific to viviparity. Hirosawa M, et al. Sci Rep, 2016 Sep 12. PMID 27615797, Free PMC Article
  2. Decellularized zebrafish cardiac extracellular matrix induces mammalian heart regeneration. Chen WC, et al. Sci Adv, 2016 Nov. PMID 28138518, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleosomal DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in heterochromatin formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
part_of nucleosome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone H2A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    35151778..35152374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163219.4 → XP_005163276.1  histone H2A-like

    UniProtKB/TrEMBL
    A0A8M2BA83, A6QL59, E7EZX1
    Related
    ENSDARP00000104399.2, ENSDART00000114908.3
    Conserved Domains (2) summary
    PTZ00017
    Location:1 → 128
    PTZ00017; histone H2A; Provisional
    cd00074
    Location:6 → 120
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
Nucleotide Protein Strain
Heading Accession and Version

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