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slc6a11a solute carrier family 6 member 11a [ Danio rerio (zebrafish) ]

Gene ID: 558960, updated on 2-Nov-2024

Summary

Official Symbol
slc6a11aprovided by ZNC
Official Full Name
solute carrier family 6 member 11aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3729
See related
Ensembl:ENSDARG00000074002 AllianceGenome:ZFIN:ZDB-GENE-030131-3729
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa11f11; fc51c07; slc6a11; wu:fa11f11; wu:fc51c07
Summary
Predicted to enable gamma-aminobutyric acid:sodium:chloride symporter activity. Predicted to be involved in amino acid transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in cell projection and plasma membrane. Is expressed in ectoderm. Orthologous to several human genes including SLC6A12 (solute carrier family 6 member 12). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See slc6a11a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40629066..40646203)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40631530..40648667)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene translocator protein Neighboring gene fibroblast growth factor receptor substrate 3 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 1 Neighboring gene microRNA 429b Neighboring gene microRNA 141

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables gamma-aminobutyric acid:sodium:chloride symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sodium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cell projection IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
solute carrier family 6 member 11a
Names
solute carrier family 6 (neurotransmitter transporter), member 11a
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
solute carrier family 6 (neurotransmitter transporter, GABA), member 11a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098387.1NP_001091857.1  solute carrier family 6 member 11a

    See identical proteins and their annotated locations for NP_001091857.1

    Status: PROVISIONAL

    Source sequence(s)
    BC141783
    UniProtKB/TrEMBL
    A0A8M1NES2, A5D8R6
    Related
    ENSDARP00000094532.2, ENSDART00000103757.4
    Conserved Domains (1) summary
    cd11496
    Location:21560
    SLC6sbd-TauT-like; Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    40629066..40646203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)