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hepacam2 HEPACAM family member 2 [ Danio rerio (zebrafish) ]

Gene ID: 558612, updated on 2-Nov-2024

Summary

Official Symbol
hepacam2provided by ZNC
Official Full Name
HEPACAM family member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-135
See related
Ensembl:ENSDARG00000061365 AllianceGenome:ZFIN:ZDB-GENE-060503-135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-287b5.2
Summary
Predicted to be located in membrane. Is expressed in female organism; mucus secreting cell; and pancreatic bud. Orthologous to human HEPACAM2 (HEPACAM family member 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See hepacam2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (40350523..40374428)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (40763403..40787308)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 6 Neighboring gene family with sequence similarity 133 member B Neighboring gene VPS50 EARP/GARPII complex subunit Neighboring gene calcitonin receptor Neighboring gene microRNA 489

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245085.1NP_001232014.1  HEPACAM family member 2 precursor

    See identical proteins and their annotated locations for NP_001232014.1

    Status: PROVISIONAL

    Source sequence(s)
    CU458977
    UniProtKB/TrEMBL
    A0A8M1NZ80, A4JYQ6
    Related
    ENSDARP00000081878.5, ENSDART00000087444.6
    Conserved Domains (2) summary
    smart00410
    Location:152234
    IG_like; Immunoglobulin like
    cl11960
    Location:157234
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    40350523..40374428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395058.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    5186..29091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)