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cfap299 cilia and flagella associated protein 299 [ Danio rerio (zebrafish) ]

Gene ID: 558475, updated on 2-Nov-2024

Summary

Official Symbol
cfap299provided by ZNC
Official Full Name
cilia and flagella associated protein 299provided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-173
See related
Ensembl:ENSDARG00000088753 AllianceGenome:ZFIN:ZDB-GENE-060526-173
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-57h10.1
Summary
Predicted to be located in cytoplasm. Orthologous to human CFAP299 (cilia and flagella associated protein 299). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See cfap299 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (39563300..39663735)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (38963147..39063582)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene PR domain containing 8b Neighboring gene fibroblast growth factor 5 Neighboring gene bone morphogenetic protein 3 Neighboring gene protein kinase cGMP-dependent 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cilia- and flagella-associated protein 299
Names
uncharacterized protein C4orf22 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001115124.1NP_001108596.1  cilia- and flagella-associated protein 299

    See identical proteins and their annotated locations for NP_001108596.1

    Status: PROVISIONAL

    Source sequence(s)
    AL929533, BX323826
    UniProtKB/Swiss-Prot
    A2AVJ0
    Related
    ENSDARP00000088644.4, ENSDART00000097872.5
    Conserved Domains (1) summary
    pfam14713
    Location:14228
    DUF4464; Domain of unknown function (DUF4464)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    39563300..39663735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394599.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    202468..303707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)