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tatdn2 TatD DNase domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 557931, updated on 28-Oct-2024

Summary

Official Symbol
tatdn2provided by ZNC
Official Full Name
TatD DNase domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-081022-51
See related
Ensembl:ENSDARG00000070618 AllianceGenome:ZFIN:ZDB-GENE-081022-51
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:194021
Summary
Predicted to enable hydrolase activity, acting on ester bonds. Orthologous to human TATDN2 (TatD DNase domain containing 2). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See tatdn2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (40439922..40449525, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (40442386..40451988, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 174 Neighboring gene ghrelin/obestatin prepropeptide Neighboring gene von Hippel-Lindau tumor suppressor Neighboring gene cereblon

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
putative deoxyribonuclease TATDN2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128693.1NP_001122165.1  putative deoxyribonuclease TATDN2

    See identical proteins and their annotated locations for NP_001122165.1

    Status: PROVISIONAL

    Source sequence(s)
    BC162648
    UniProtKB/TrEMBL
    B3DH59
    Related
    ENSDARP00000094655.2, ENSDART00000103879.4
    Conserved Domains (1) summary
    pfam01026
    Location:412677
    TatD_DNase; TatD related DNase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    40439922..40449525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166044.5XP_005166101.1  putative deoxyribonuclease TATDN2 isoform X1

    See identical proteins and their annotated locations for XP_005166101.1

    UniProtKB/TrEMBL
    A0A8M2BDK8, F1QY16
    Related
    ENSDARP00000143970.1, ENSDART00000179469.2
    Conserved Domains (1) summary
    pfam01026
    Location:412677
    TatD_DNase; TatD related DNase
  2. XM_005166043.4XP_005166100.1  putative deoxyribonuclease TATDN2 isoform X1

    See identical proteins and their annotated locations for XP_005166100.1

    UniProtKB/TrEMBL
    A0A8M2BDK8, F1QY16
    Conserved Domains (1) summary
    pfam01026
    Location:412677
    TatD_DNase; TatD related DNase