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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Danio rerio (zebrafish) ]

Gene ID: 557675, updated on 2-Nov-2024

Summary

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Official Symbol
c1galt1laprovided by ZNC
Official Full Name
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-303
See related
Ensembl:ENSDARG00000055585 AllianceGenome:ZFIN:ZDB-GENE-061013-303
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi11c09; c1galt1a; wu:fi11c09; zgc:153355
Summary
Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in angiogenesis and kidney development. Predicted to be located in membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: 23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (28092083..28139115)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (28165542..28210198)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene Sp5 transcription factor-like Neighboring gene solute carrier family 26 member 10 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1a Neighboring gene tachykinin precursor 3a Neighboring gene zinc finger protein 385A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular Toxicity of Metal Oxide Nanoparticles in Danio rerio. Hou J, et al. Environ Sci Technol, 2018 Jul 17. PMID 29944347
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC153355

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in angiogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in kidney development ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A
Names
C1GalT1-A
c1galt1l
core 1 O-glycan T-synthase A
core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-A
core 1 beta1,3-galactosyltransferase 1-A
core 1 beta3-Gal-T-A
core 1 beta3-Gal-T1-A
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a
core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-A
NP_001070842.1
XP_005162312.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077374.1 → NP_001070842.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

    See identical proteins and their annotated locations for NP_001070842.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124666
    UniProtKB/Swiss-Prot
    Q08BL3
    UniProtKB/TrEMBL
    B2GPW7
    Related
    ENSDARP00000053957.5, ENSDART00000053958.7
    Conserved Domains (1) summary
    cl21608
    Location:169 → 292
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    28092083..28139115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162255.5 → XP_005162312.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

    UniProtKB/TrEMBL
    A0A8M2B944, F1QGX4
    Related
    ENSDARP00000134314.1, ENSDART00000158260.2
    Conserved Domains (1) summary
    cl21608
    Location:169 → 292
    Galactosyl_T; Galactosyltransferase

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395155.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    37724..82317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08BL3.1 GenPept UniProtKB/Swiss-Prot:Q08BL3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.