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palld palladin, cytoskeletal associated protein [ Danio rerio (zebrafish) ]

Gene ID: 557660, updated on 2-Nov-2024

Summary

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Official Symbol
palldprovided by ZNC
Official Full Name
palladin, cytoskeletal associated proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-252
See related
Ensembl:ENSDARG00000040009 AllianceGenome:ZFIN:ZDB-GENE-041014-252
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-90m5.1
Summary
Predicted to be involved in cell-cell adhesion. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human PALLD (palladin, cytoskeletal associated protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See palld in Genome Data Viewer
Location:
chromosome: 20
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (23498262..23649028)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (23643078..23749928)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene SLAIN motif family, member 2 Neighboring gene anaphase promoting complex subunit 4 Neighboring gene si:ch211-191d2.2 Neighboring gene carbonyl reductase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of transcripts potentially involved in neural tube closure using RNA sequencing. Kindt LM, et al. Genesis, 2018 Mar. PMID 29488319, Free PMC Article
  2. Interleukin-11 signaling promotes cellular reprogramming and limits fibrotic scarring during tissue regeneration. Allanki S, et al. Sci Adv, 2021 Sep 10. PMID 34516874, Free PMC Article
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
palladin; palladin, cytoskeletal associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    23498262..23649028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468620.2 → XP_021324295.1  palladin isoform X1

    UniProtKB/TrEMBL
    A0A286Y9B4, A0A8M9PT98, F8W315
    Related
    ENSDARP00000124534.3, ENSDART00000149922.4
    Conserved Domains (2) summary
    pfam07679
    Location:271 → 358
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:1273 → 1347
    Ig; Immunoglobulin domain

  2. XM_021468621.2 → XP_021324296.1  palladin isoform X3

    UniProtKB/TrEMBL
    A0A8M9PPW4, Q5RHD8
    Related
    ENSDARP00000058531.4, ENSDART00000058532.5
    Conserved Domains (2) summary
    pfam07679
    Location:271 → 358
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:1261 → 1335
    Ig; Immunoglobulin domain

  3. XM_021468623.2 → XP_021324298.1  palladin isoform X5

    UniProtKB/TrEMBL
    A0A8M9PC71
    Conserved Domains (2) summary
    pfam07679
    Location:271 → 358
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:1227 → 1301
    Ig; Immunoglobulin domain

  4. XM_021468622.2 → XP_021324297.1  palladin isoform X2

    UniProtKB/TrEMBL
    A0A8M9P2X9
    Conserved Domains (2) summary
    pfam07679
    Location:271 → 358
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:1261 → 1335
    Ig; Immunoglobulin domain

  5. XM_068215633.1 → XP_068071734.1  palladin isoform X4

  6. XM_017352596.3 → XP_017208085.1  palladin isoform X6

    UniProtKB/TrEMBL
    A0A8M6YUW8

  7. XM_017352599.3 → XP_017208088.1  palladin isoform X7

    UniProtKB/TrEMBL
    A0A8M6YWR5

  8. XM_068215634.1 → XP_068071735.1  palladin isoform X8

Nucleotide Protein Strain
Heading Accession and Version

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