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LOC5570897 laminin subunit alpha-1 [ Aedes aegypti (yellow fever mosquito) ]

Gene ID: 5570897, updated on 10-May-2024

Summary

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Gene symbol
LOC5570897
Gene description
laminin subunit alpha-1
See related
VectorBase:AAEL001493
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes aegypti
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Also known as
AAEL001477; AAEL001493
Orthologs
fruit fly all
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Genomic context

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See LOC5570897 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
101 current AaegL5.0 (GCF_002204515.2) 2 NC_035108.1 (263974160..264521445, complement)

Chromosome 2 - NC_035108.1Genomic Context describing neighboring genes Neighboring gene Dual-specificity tyrosine phosphorylation-regulated kinase 2 Neighboring gene uncharacterized LOC110676565 Neighboring gene uncharacterized LOC110676566 Neighboring gene uncharacterized LOC110676567 Neighboring gene non-lysosomal glucosylceramidase Neighboring gene RNA polymerase II elongation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035108.1 Chromosome 2 Reference AaegL5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaegL5.0 Primary Assembly

Genomic

  1. NC_035108.1 Reference AaegL5.0 Primary Assembly

    Range
    263974160..264521445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021844981.1 → XP_021700673.1  laminin subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8T514, Q17L45
    Conserved Domains (8) summary
    smart00180
    Location:1085 → 1131
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1133 → 1178
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3121 → 3278
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1034 → 1082
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1420 → 1560
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:122 → 352
    Laminin_N; Laminin N-terminal (Domain VI)
    cl25723
    Location:1823 → 2046
    KELK; KELK-motif containing domain of MRCK Ser/Thr protein kinase
    cl25732
    Location:1983 → 2311
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021844982.1 → XP_021700674.1  laminin subunit alpha-1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8T544, Q17L45
    Conserved Domains (8) summary
    smart00180
    Location:1085 → 1131
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1133 → 1178
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3117 → 3274
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1034 → 1082
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1420 → 1560
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:122 → 352
    Laminin_N; Laminin N-terminal (Domain VI)
    cl25723
    Location:1823 → 2046
    KELK; KELK-motif containing domain of MRCK Ser/Thr protein kinase
    cl25732
    Location:1983 → 2311
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021844983.1 → XP_021700675.1  laminin subunit alpha-1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8T4Z8, Q17L45
    Conserved Domains (8) summary
    smart00180
    Location:1085 → 1131
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1133 → 1178
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2522 → 2684
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1034 → 1082
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1420 → 1560
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:122 → 352
    Laminin_N; Laminin N-terminal (Domain VI)
    cl25723
    Location:1823 → 2046
    KELK; KELK-motif containing domain of MRCK Ser/Thr protein kinase
    cl25732
    Location:1983 → 2311
    SMC_N; RecF/RecN/SMC N terminal domain

RNA

  1. XR_002500521.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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