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LOC5567482 transmembrane and TPR repeat-containing protein CG4050 [ Aedes aegypti (yellow fever mosquito) ]

Gene ID: 5567482, updated on 23-Mar-2024

Summary

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Gene symbol
LOC5567482
Gene description
transmembrane and TPR repeat-containing protein CG4050
See related
VectorBase:AAEL019703
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes aegypti
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Also known as
AAEL000945; AAEL000966; AAEL000971
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Genomic context

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See LOC5567482 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
101 current AaegL5.0 (GCF_002204515.2) 3 NC_035109.1 (377435370..378355509, complement)

Chromosome 3 - NC_035109.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110678321 Neighboring gene LIRP Neighboring gene tetraspanin-2A Neighboring gene putative GPI-anchored protein pfl2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035109.1 Chromosome 3 Reference AaegL5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein CG4050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaegL5.0 Primary Assembly

Genomic

  1. NC_035109.1 Reference AaegL5.0 Primary Assembly

    Range
    377435370..378355509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021852555.1 → XP_021708247.1  transmembrane and TPR repeat-containing protein CG4050

    UniProtKB/TrEMBL
    A0A6I8TXV0
    Conserved Domains (4) summary
    sd00006
    Location:566 → 593
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:92 → 233
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    cl26002
    Location:441 → 804
    TPR_11; TPR repeat

  2. XM_021852557.1 → XP_021708249.1  transmembrane and TPR repeat-containing protein CG4050

    UniProtKB/TrEMBL
    A0A6I8TXV0
    Conserved Domains (4) summary
    sd00006
    Location:566 → 593
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:92 → 233
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    cl26002
    Location:441 → 804
    TPR_11; TPR repeat

  3. XM_021852556.1 → XP_021708248.1  transmembrane and TPR repeat-containing protein CG4050

    UniProtKB/TrEMBL
    A0A6I8TXV0
    Conserved Domains (4) summary
    sd00006
    Location:566 → 593
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:92 → 233
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    cl26002
    Location:441 → 804
    TPR_11; TPR repeat

  4. XM_021852558.1 → XP_021708250.1  transmembrane and TPR repeat-containing protein CG4050

    UniProtKB/TrEMBL
    A0A6I8TXV0
    Conserved Domains (4) summary
    sd00006
    Location:566 → 593
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:92 → 233
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    cl26002
    Location:441 → 804
    TPR_11; TPR repeat

  5. XM_021852554.1 → XP_021708246.1  transmembrane and TPR repeat-containing protein CG4050

    UniProtKB/TrEMBL
    A0A6I8TXV0
    Conserved Domains (4) summary
    sd00006
    Location:566 → 593
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:261 → 333
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:92 → 233
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    cl26002
    Location:441 → 804
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

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