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LOC5566101 zeta-sarcoglycan [ Aedes aegypti (yellow fever mosquito) ]

Gene ID: 5566101, updated on 10-May-2024

Summary

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Gene symbol
LOC5566101
Gene description
zeta-sarcoglycan
See related
VectorBase:AAEL005840
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes aegypti
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Also known as
AAEL005840
Orthologs
fruit fly all
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Genomic context

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See LOC5566101 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
101 current AaegL5.0 (GCF_002204515.2) 1 NC_035107.1 (117568975..117892249, complement)

Chromosome 1 - NC_035107.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family A member 3 Neighboring gene uncharacterized LOC110676790 Neighboring gene uncharacterized LOC110674281 Neighboring gene uncharacterized LOC5565273

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035107.1 Chromosome 1 Reference AaegL5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC5566101; zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaegL5.0 Primary Assembly

Genomic

  1. NC_035107.1 Reference AaegL5.0 Primary Assembly

    Range
    117568975..117892249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021845974.1 → XP_021701666.1  uncharacterized protein LOC5566101 isoform X1

    UniProtKB/TrEMBL
    A0A6I8TBK6
    Conserved Domains (1) summary
    pfam04790
    Location:425 → 697
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_021845980.1 → XP_021701672.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A903U4V1
    Conserved Domains (1) summary
    pfam04790
    Location:240 → 512
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials