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nmt2 N-myristoyltransferase 2 [ Danio rerio (zebrafish) ]

Gene ID: 556483, updated on 18-Sep-2024

Summary

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Official Symbol
nmt2provided by ZNC
Official Full Name
N-myristoyltransferase 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-717
See related
Ensembl:ENSDARG00000021808 AllianceGenome:ZFIN:ZDB-GENE-030131-717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
NMT 2; fb40e03; wu:fb40e03
Summary
Predicted to enable glycylpeptide N-tetradecanoyltransferase activity. Predicted to be involved in N-terminal peptidyl-glycine N-myristoylation. Predicted to act upstream of or within N-terminal protein myristoylation. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human NMT2 (N-myristoyltransferase 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See nmt2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (28578352..28592494)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (28643729..28657871)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene integrin, alpha 8 Neighboring gene family with sequence similarity 171 member A1 Neighboring gene ribonuclease P/MRP 38 subunit Neighboring gene acyl-CoA binding domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of differential transcript profiles between mutual crossbred embryos of zebrafish (Danio rerio) and Chinese rare minnow (Gobiocypris rarus) by cDNA-AFLP. Liu J, et al. Theriogenology, 2008 Dec. PMID 18692889
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycylpeptide N-tetradecanoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycylpeptide N-tetradecanoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycylpeptide N-tetradecanoyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables peptidyl-lysine N6-myristoyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in N-terminal peptidyl-glycine N-myristoylation ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within N-terminal protein myristoylation IEA
Inferred from Electronic Annotation
more info
  
involved_in protein localization to membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycylpeptide N-tetradecanoyltransferase 2
NP_001186683.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199754.1 → NP_001186683.1  glycylpeptide N-tetradecanoyltransferase 2

    Status: VALIDATED

    Source sequence(s)
    BC115323, BX322614, EB929892
    UniProtKB/Swiss-Prot
    A7YT82, F1QBV9
    UniProtKB/TrEMBL
    H2ZRH9
    Related
    ENSDARP00000124979.1, ENSDART00000149306.2
    Conserved Domains (3) summary
    COG5092
    Location:114 → 492
    NMT1; N-myristoyl transferase [Lipid metabolism]
    pfam01233
    Location:134 → 289
    NMT; Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
    pfam02799
    Location:305 → 480
    NMT_C; Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    28578352..28592494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7YT82.2 GenPept UniProtKB/Swiss-Prot:A7YT82

Gene LinkOut

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