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zgc:162634 zgc:162634 [ Danio rerio (zebrafish) ]

Gene ID: 555881, updated on 2-Nov-2024

Summary

Official Symbol
zgc:162634provided by ZNC
Official Full Name
zgc:162634provided by ZNC
Primary source
ZFIN:ZDB-GENE-050506-109
See related
Ensembl:ENSDARG00000045773 AllianceGenome:ZFIN:ZDB-GENE-050506-109
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6906813
Summary
Predicted to be located in membrane. Orthologous to human PYURF (PIGY upstream open reading frame). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See zgc:162634 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (17847104..17849574)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (17750704..17753174)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18a Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Y Neighboring gene BTB (POZ) domain containing 10a Neighboring gene parathyroid hormone 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
protein preY, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089372.1NP_001082841.1  protein preY, mitochondrial

    See identical proteins and their annotated locations for NP_001082841.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134053
    UniProtKB/TrEMBL
    A3KNX3
    Related
    ENSDARP00000067289.6, ENSDART00000067290.7
    Conserved Domains (1) summary
    COG2835
    Location:4796
    YcaR; Uncharacterized conserved protein YbaR, Trm112 family [Function unknown]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    17847104..17849574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)