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si:dkey-68o6.5 si:dkey-68o6.5 [ Danio rerio (zebrafish) ]

Gene ID: 555585, updated on 12-Sep-2024

Summary

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Official Symbol
si:dkey-68o6.5provided by ZNC
Official Full Name
si:dkey-68o6.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5416
See related
Ensembl:ENSDARG00000099247 AllianceGenome:ZFIN:ZDB-GENE-030131-5416
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd16e03; wu:fd16e03
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See si:dkey-68o6.5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (24596416..24603706)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (24465392..24473158)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene chromodomain-helicase-DNA-binding protein 5 Neighboring gene SP110 nuclear antigen, tandem duplicate 3 Neighboring gene si:dkey-68o6.6 Neighboring gene zgc:171506

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein si:dkey-68o6.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    24596416..24603706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_697961.9 → XP_703053.1  uncharacterized protein si:dkey-68o6.5

    UniProtKB/TrEMBL
    A0A0R4ICN1, A0A8N7T8Q7
    Related
    ENSDARP00000132835.1, ENSDART00000169405.2
    Conserved Domains (1) summary
    pfam01342
    Location:136 → 192
    SAND; SAND domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394532.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    74262..81513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471425.2 → XP_021327100.1  uncharacterized protein si:dkey-68o6.5

    UniProtKB/TrEMBL
    A0A8M9Q120
    Conserved Domains (1) summary
    pfam01342
    Location:136 → 192
    SAND; SAND domain
Nucleotide Protein Strain
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