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c1galt1a core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1a [ Danio rerio (zebrafish) ]

Gene ID: 555344, updated on 14-Nov-2024

Summary

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Official Symbol
c1galt1aprovided by ZNC
Official Full Name
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060503-810
See related
Ensembl:ENSDARG00000062278 AllianceGenome:ZFIN:ZDB-GENE-060503-810
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-202e17.1
Summary
Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See c1galt1a in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (25512795..25524099, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (25927800..25939886, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene replication protein A3 Neighboring gene collagen, type XXVIII, alpha 1a Neighboring gene succinate dehydrogenase complex assembly factor 3 Neighboring gene tachykinin precursor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
NP_001121803.1
XP_005170092.1
XP_068071231.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128331.1 → NP_001121803.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    See identical proteins and their annotated locations for NP_001121803.1

    Status: PROVISIONAL

    Source sequence(s)
    BX842688, CR318650
    UniProtKB/TrEMBL
    A0A8M3AVI3, A3KQK4, F1R8T4
    Related
    ENSDARP00000084315.4, ENSDART00000089882.5
    Conserved Domains (1) summary
    cl21608
    Location:70 → 160
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    25512795..25524099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215130.1 → XP_068071231.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

  2. XM_005170035.5 → XP_005170092.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BHE0
    Conserved Domains (1) summary
    cl21608
    Location:139 → 229
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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