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rabgap1l RAB GTPase activating protein 1-like [ Danio rerio (zebrafish) ]

Gene ID: 555272, updated on 18-Sep-2024

Summary

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Official Symbol
rabgap1lprovided by ZNC
Official Full Name
RAB GTPase activating protein 1-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-389
See related
Ensembl:ENSDARG00000061757 AllianceGenome:ZFIN:ZDB-GENE-050208-389
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-197g15.12
Summary
Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to act upstream of or within positive regulation of GTPase activity. Orthologous to human RABGAP1L (RAB GTPase activating protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rabgap1l in Genome Data Viewer
Location:
chromosome: 22
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (17312064..17454457)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (17278718..17429475)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene tudor domain containing 5 Neighboring gene family with sequence similarity 163 member Ab Neighboring gene G protein-coupled receptor 52 Neighboring gene si:ch211-197g15.9 Neighboring gene interferon induced protein 44f1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables small GTPase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of protein localization IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
rab GTPase-activating protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    17312064..17454457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469587.2 → XP_021325262.2  rab GTPase-activating protein 1-like isoform X1

    Related
    ENSDARP00000082893.5, ENSDART00000088460.7

  2. XM_068216445.1 → XP_068072546.1  rab GTPase-activating protein 1-like isoform X2

  3. XM_068216446.1 → XP_068072547.1  rab GTPase-activating protein 1-like isoform X3

    Related
    ENSDARP00000116752.1, ENSDART00000139523.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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