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CLSA_RS07345 rhamnogalacturonan lyase B N-terminal domain-containing protein [ Clostridium saccharobutylicum DSM 13864 ]

Gene ID: 55474004, updated on 12-Apr-2023

Summary

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Gene symbol
CLSA_RS07345
Gene description
rhamnogalacturonan lyase B N-terminal domain-containing protein
Locus tag
CLSA_RS07345
Gene type
protein coding
Organism
Clostridium saccharobutylicum DSM 13864 (strain: DSM 13864, culture-collection: DSM:13864, type-material: type strain of Clostridium saccharobutylicum)
Lineage
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Old locus tag
CLSA_c15040
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Genomic context

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Sequence:
NC_022571.1 (1690377..1692032, complement)

NC_022571.1Genomic Context describing neighboring genes Neighboring gene DUF503 domain-containing protein Neighboring gene helix-turn-helix domain-containing protein Neighboring gene tyrosine--tRNA ligase Neighboring gene glycoside hydrolase family 1 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022571.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4. McDonough MA, et al. FEBS Lett, 2004 May 7. PMID 15135077
  2. Structural and biochemical studies elucidate the mechanism of rhamnogalacturonan lyase from Aspergillus aculeatus. Jensen MH, et al. J Mol Biol, 2010 Nov 19. PMID 20851126
  3. Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864). Poehlein A, et al. Genome Announc, 2013 Nov 27. PMID 24285650, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rhamnogalacturonan lyase B N-terminal domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_022571.1 Reference assembly

    Range
    1690377..1692032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_022744783.1 rhamnogalacturonan lyase B N-terminal domain-containing protein [Clostridium saccharobutylicum]

    UniProtKB/TrEMBL
    U5MNZ8
    Conserved Domains (3) summary
    cd10317
    Location:385 → 549
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam09284
    Location:41 → 288
    RhgB_N; Rhamnogalacturonan lyase B, N-terminal
    pfam14686
    Location:313 → 363
    fn3_3; Polysaccharide lyase family 4, domain II
Nucleotide Protein
Heading Accession and Version

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