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LOC554206 leucine carboxyl methyltransferase 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 554206, updated on 22-Oct-2024

Summary

Gene symbol
LOC554206
Gene description
leucine carboxyl methyltransferase 1 pseudogene
See related
Ensembl:ENSG00000291179
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC554206 in Genome Data Viewer
Location:
16p12.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25031741..25032777)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (25311354..25312390)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25043062..25044098)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 17 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:24999769-25000372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10601 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25025578-25026246 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:25026247-25026915 Neighboring gene thyroid hormone receptor interactor 11 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr16:25033996-25034167 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10602 Neighboring gene Sharpr-MPRA regulatory region 2109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7293 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7294 Neighboring gene long intergenic non-protein coding RNA 2175 Neighboring gene SCML2 pseudogene 2

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI553759, AI696363, BC029609, BX116226, DB115487
    Related
    ENST00000619106.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    25031741..25032777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    25311354..25312390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)