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ints8 integrator complex subunit 8 [ Danio rerio (zebrafish) ]

Gene ID: 553794, updated on 2-Nov-2024

Summary

Official Symbol
ints8provided by ZNC
Official Full Name
integrator complex subunit 8provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-556
See related
Ensembl:ENSDARG00000057986 AllianceGenome:ZFIN:ZDB-GENE-050522-556
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:111823
Summary
Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS8 (integrator complex subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See ints8 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (17837950..17996212, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (18379389..18537703, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II beta Neighboring gene pyroglutamylated RFamide peptide Neighboring gene sorting nexin 10a Neighboring gene chromobox homolog 3a (HP1 gamma homolog, Drosophila)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC111823

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
integrator complex subunit 8
Names
DKEYP-26F11.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020756.2NP_001018592.2  integrator complex subunit 8

    Status: VALIDATED

    Source sequence(s)
    BX927231, CR388100, CR391921
    UniProtKB/TrEMBL
    A0A8M1N674, A3KQN9
    Related
    ENSDARP00000095264.3, ENSDART00000104491.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    17837950..17996212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215129.1XP_068071230.1  integrator complex subunit 8 isoform X1